Metadata dataset Registered June 07, 2021

    ITS samples from the air and snow of Livingston Island

    Description

    Snow (n=2) and air (n=1) samples from Livingston Island (Antarctica) were analyzed for the presence of Fungi using amplicon sequencing techniques (Illumina MiSeq, ITS2 marker gene).

    Purpose

    Raw DNA sequence data

    Geographic scope

    Description

    Antarctica: Livingston Island, near Spanish Juan Carlos I station

    Bounding box
    Latitude
    From -62.671 to -62.671
    Longitude
    From -60.379 to -60.379

    Temporal scope

    range
    March 11, 2019 - March 20, 2019

    Methodology

    Sampling

    Two air samples were collected with a high flow glass impinger following Šantl-Temkiv et al. The chamber was filled with 2 L of sampling liquid (ddH2O) and the sampler was run for 5 min, so that the liquid came in contact with the entire chamber, after which 0.5 L of the sampling liquid was removed, stored as a control, and analyzed along with the samples. The resulting solution was filtered directly on the Sterivex filter units for the air. Air was collected over c. 5 h on March 11th 2019. In addition, the two separate air DNA extractions were combined together in order to increase DNA yield. Two freshly deposited snow samples were collected on March 20th 2019 at the same site using a sterilized shovel. Both pairs of samples were separately combined in order to increase DNA yield. Snow was melted at room temperature, under strictly sterile conditions, for 24 h in the laboratory at Juan Carlos I Station and then filtered using Sterivex filters.

    Study extent

    Air and snow samples were collected at Punta Polaca (62°40′16″ S; 60°22′43″ W), Hurd Peninsula, Livingston Island, South Shetland Islands, near to the Spanish station Juan Carlos I in March 2019.

    Quality control

    The control represented a field blank to certify that the samples were not contaminated by external organisms.

    Method steps
    1. Total DNA was extracted from environmental samples using the Qiagen Power Soil Kit (Qiagen, USA) following the manufacturer’s instructions. Extracted DNA was used as template for generating PCR amplicons. The internal transcribed spacer 2 (ITS2) of the nuclear ribosomal DNA was used as a DNA barcode for molecular species identification. PCR amplicons were generated using the universal primers ITS3 and ITS4 and were sequenced by high-throughput sequencing at Macrogen Inc. (South Korea) on an Illumina MiSeq sequencer, using the MiSeq Reagent Kit v3 (600-cycle) following the manufacturer’s protocol.

    Bibliography

    • Rosa, L. H., Pinto, O. H. B., Šantl-Temkiv, T., Convey, P., Carvalho-Silva, M., Rosa, C. A., & Câmara, P. E. (2020). DNA metabarcoding of fungal diversity in air and snow of Livingston Island, South Shetland Islands, Antarctica. Scientific reports, 10(1), 1-11.
      Google Scholar

    Contacts

    • Luis Hendrique Rosa

      Originator
      Organization
      Universidade Federal de Minas Gerais
      Roles
      Originator
    • Otavo Henrique Bezzera Pinto

      Originator
      Roles
      Originator
    • Tina Santl-Temkiv

      Originator
      Roles
      Originator
    • Peter Convey

      Originator
      Roles
      Originator
    • Micheline Carvalho-Silva

      Originator
      Roles
      Originator
    • Carlos Augusto Rosa

      Originator
      Roles
      Originator
    • Paulo Camara

      Originator
      Roles
      Originator
    • Maxime Sweetlove

      Metadata author
      Organization
      Royal Belgian Institute of Natural Sciences
      Roles
      Metadata author
      Email
    • Luiz Hendrique Rosa

      Administrative point of contact
      Organization
      Universidade Federal de Minas Gerais
      Roles
      Administrative point of contact

    GBIF registration

    Registration date
    June 07, 2021
    Metadata last modified
    June 07, 2021
    Publication date
    June 07, 2021
    Hosted by
    Antarctic Biodiversity Information Facility (ANTABIF)
    Installation
    ANTABIF IPT
    Endpoints
    EML
    Preferred identifier
    10.15468/ahvmcd
    Alternative identifiers

    Citation

    Rosa L H, Pinto O H B, Santl-Temkiv T, Convey P, Carvalho-Silva M, Rosa C A, Camara P, Sweetlove M (2021). ITS samples from the air and snow of Livingston Island. SCAR - Microbial Antarctic Resource System. Metadata dataset https://doi.org/10.15468/ahvmcd accessed via GBIF.org on 2025-08-02.