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    Specimen Aug 6, 2019

    Chrysocampanula spinifera

    Sweden
    Sequenced

    Record

    GrSciColl institution
    6ba467ae-5cc5-4510-a624-3c0adcc64b76
    Dataset
    18S: A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea
    Basis of record
    Material sample

    Taxon

    Scientific name
    Chrysocampanula spinifera
    Taxon ID
    ASV:85953ad414872433eb605a1bc3fbb692
    Class
    Prymnesiales
    Order
    Prymnesiophyceae
    Family
    Prymnesiales_X
    Genus
    Chrysocampanula
    Specific epithet
    spinifera
    Rank
    species
    Taxon remarks
    Domain = 'Eukaryota'
    GBIF Backbone Taxonomy

    Chrysocampanula spinifera Fournier, 1971

    KingdomChromistaPhylumHaptophytaClassPrymnesiophyceaeOrderPrymnesialesFamilyChrysochromulinaceaeGenusChrysochromulinaSpeciesChrysochromulina spiniferaenums.taxonRank.null
    • Taxon ID not found
    Synonymaccepted name: Chrysochromulina spinifera (Fournier) Pienaar & Norris
    Catalogue of Life

    Chrysocampanula spinifera Fournier, 1971

    DomainEukaryotaKingdomChromistaPhylumHaptophytaSubphylumHaptophytinaClassCoccolithophyceaeOrderPrymnesialesFamilyChrysochromulinaceaeGenusChrysochromulinaSpeciesChrysochromulina spiniferaenums.taxonRank.null
    • Taxon ID not found
    Synonymaccepted name: Chrysochromulina spinifera (Fournier) Pienaar & Norris, 1979
    Date identified
    2025-06-09
    Identification references
    Identification remarks
    Ampliseq v2.14.0 (https://nf-co.re/ampliseq) DADA2:assignTaxonomy:addSpecies annotation against PR2 v5.1.0 (https://github.com/pr2database/pr2database/releases/tag/v5.1.0.0); confidence at lowest specified (ASV portal) taxon: 1

    Location

    Location ID
    Slaggo
    Continent
    Europe
    Inferred
    Country or area
    Sweden
    Inferred
    Verbatim locality
    Skagerrak
    Decimal latitude
    58.26
    Decimal longitude
    11.436
    Elevation
    0
    Inferred
    Elevation accuracy
    0
    Inferred
    Depth
    5
    Inferred
    Depth accuracy
    5
    Inferred
    Geodetic datum
    EPSG:4326
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    Occurrence

    Occurrence ID
    PRJEB55296-18S:P20107_457:ASV_18S_681
    Recorded by
    • KTH Royal Institute of Technology
    • Swedish Meteorological and Hydrological Institute (SMHI)
    • Umeå University (UMU)
    Organism quantity
    224
    Organism quantity type
    DNA sequence reads
    Sex
    Occurrence status
    Present
    Inferred
    Associated sequences
    Event ID
    PRJEB55296-18S:P20107_457
    Event date
    2019-08-06
    Sampling protocol
    Sample size value
    101,081
    Sample size unit
    DNA sequence reads
    Previous identifications
    By data provider: Eukaryota|Haptophyta|Prymnesiophyceae|Prymnesiales|Prymnesiales_X|Chrysocampanula|||; By ASV portal: Haptista|Haptophyta|Prymnesiophyceae|Prymnesiales|Prymnesiales_X|Chrysocampanula|spinifera||
    Material sample ID
    https://www.ebi.ac.uk/ena/browser/view/SAMEA110702357

    Other

    Record licence
    CC0 1.0
    Inferred
    Institution code
    KTH
    Institution ID
    Dataset ID
    • PRJEB55296-18S
    Dataset name
    • 18S: A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea
    Identifier
    PRJEB55296-18S:P20107_457:ASV_18S_681
    GBIF ID
    4422944584

    DNA derived data

    0000014
    saline water [ENVO:00002010]
    0000012
    marine pelagic biome [ENVO:01000023]
    0000045
    V4
    0000013
    neritic epipelagic zome biome [ENVO:01000042]
    0000044
    18S rRNA
    0000041
    paired
    0000050
    Illumina MiSeq
    0000090
    https://nf-co.re/ampliseq
    pcr_primer_name_reverse
    V4RB
    pcr_primer_forward
    CCAGCASCYGCGGTAATTCC
    pcr_primer_name_forward
    V4F
    pcr_primer_reverse
    ACTTTCGTTCTTGATYRR
    dna_sequence
    AGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAACGCTCGTAGTCGGATTTCGGGGCGAACCCGCCGGTCTGCCGTTGGGTATGCACTGGTGGGCGCGTCCTTCCTTCCGGAGACCGTTCCTACTCTTAGCTGAGCGGGGACGGGAGACGGATCGTTTACTTTGAAAAAATCAGAGTGTTTCAAGCAGGCATTTGCTCTTGCATGGATTAGCATGGGATAATGAAATAGGACTTTGGTGCTATTTTGTTGGTTTCGAACACCGAAGTAATGATTAACAGGGACAGTCAGGGGCACTCGTATTCCGCCGAGAGAGGTGAAATTCTCAGACCAGCGGAAGACGAACCACTGCGAAAGCATTTGCCAGGGATGTTTTCA

    Extended measurement or fact

    3 rows
    Measurement type
    sample_DNA_concentration
    Whether the record has geospatial issues.
    2.02
    Measurement unit
    ng/mL
    Occurrence id
    PRJEB55296-18S:P20107_457:ASV_18S_681
    Measurement ID
    PRJEB55296-18S:P20107_457:sample_DNA_concentration
    Measurement type
    sampled_volume
    Whether the record has geospatial issues.
    500
    Measurement unit
    mL
    Occurrence id
    PRJEB55296-18S:P20107_457:ASV_18S_681
    Measurement ID
    PRJEB55296-18S:P20107_457:sampled_volume
    Measurement type
    water_depth
    Whether the record has geospatial issues.
    70
    Measurement unit
    m
    Occurrence id
    PRJEB55296-18S:P20107_457:ASV_18S_681
    Measurement ID
    PRJEB55296-18S:P20107_457:water_depth

    Citation

    Please use this citation in publications
    Latz M, Andersson A, Brugel S, Hedblom M, Jurdzinski K, Karlson B, Lindh M, Lycken J (2025). 18S: A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea. Version 1.13. KTH Royal Institute of Technology. Occurrence dataset. https://www.gbif.se/ipt/resource?r=prjeb55296-18s&v=1.13 https://doi.org/10.15468/cwjstg accessed via GBIF.org on 2025-08-12. https://gbif.org/occurrence/4422944584
    API access
    Dataset
    18S: A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea
    Publisher
    KTH Royal Institute of Technology
    Last crawled
    2025-07-01T15:34:56.831